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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0122s0053.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 512aa MW: 56060.9 Da PI: 7.0107 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.5 | 7.4e-30 | 205 | 262 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkg efprsYY+Ct+++C+vkk +er++ d++++e++Y+g+H h+k Kalax.0122s0053.1.p 205 TDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLLERNH-DGRITEVIYKGTHAHPK 262 6***************************************9.***************85 PP | |||||||
2 | WRKY | 102 | 3.4e-32 | 368 | 426 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+ +d k v++tYeg+Hnh+ Kalax.0122s0053.1.p 368 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERACHDIKSVITTYEGKHNHD 426 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.7E-26 | 197 | 263 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.378 | 199 | 263 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-23 | 202 | 263 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-31 | 204 | 262 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-23 | 206 | 261 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-36 | 353 | 428 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-28 | 360 | 428 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.262 | 363 | 428 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 368 | 427 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-25 | 369 | 426 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MNLTNPHSAS DHLGRSGPHD PRFVPSHSTI PSPPAATEAA DTVVATVSSI PNVSRYKLMS 60 PAKLPISRSM PHTAPPGLSP SSLLDSPVQF CNIKVEPSPT TGTLHKPQPM LGGVGYAAAA 120 STSYANNSAC VGKISDNSEF GTQSQSNFAT GSSLLPSQAF PVTESQQYEL QSQHIEGEKA 180 IQYATASPPD QNEVRLSAVS DNSSTDGYNW RKYGQKHVKG CEFPRSYYKC THPNCEVKKL 240 LERNHDGRIT EVIYKGTHAH PKPQSKRRFP NDSVMGTTDE HLERFSYQSE EMALGASAAT 300 PDMDGTSEFP SGPPSDEELN DDKYDDDGDD PNSKRRKQDM GVVHFISSVK PIREPRVVVQ 360 TVSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNAGCP VRKHVERACH DIKSVITTYE 420 GKHNHDVPAA KSNNQEASAA AVDPFSSYTA NMGSSSVMQN DSVTQVSARY QLPPNFRNQY 480 PDNEGENFRF ATPYLSSNAY PQNLRSLQMG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-36 | 206 | 429 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-36 | 206 | 429 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298853.1 | 1e-130 | WRKY-like drought-induced family protein | ||||
Swissprot | Q93WV0 | 1e-121 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | B9GJX1 | 1e-130 | B9GJX1_POPTR; WRKY-like drought-induced family protein | ||||
STRING | POPTR_0001s37260.1 | 1e-130 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-94 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0122s0053.1.p |